Structural Similarities for the Entities in PDB 3VEP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,G,J,X

Description: Uncharacterized protein Rv3413c/MT3522 protein | Length: 80


Entity #2 | Chains A,D,E,H

Description: Probable RNA polymerase sigma-D factor protein | Length: 86

No structure alignment results are available for 3VEP.A, 3VEP.D, 3VEP.E, 3VEP.H explicitly.

These chains are represented by chain 3VFZ.A which is 100% sequence identical.

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View how chain 3VEP.H compares with the representative chain PDP:3VFZAa. Select a comparison method: