Structural Similarities for the Entities in PDB 3V81

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: HIV-1 Reverse Transcriptase P66 subunit protein | Length: 556

No structure alignment results are available for 3V81.A, 3V81.C explicitly.

These chains are represented by chain 4G1Q.A which has more than 95% sequence identity.

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View how chain 3V81.C compares with the representative chain PDP:4G1QAa. Select a comparison method:


Entity #2 | Chains B,D

Description: HIV-1 Reverse Transcriptase P51 subunit protein | Length: 428

No structure alignment results are available for 3V81.B, 3V81.D explicitly.

These chains are represented by chain 4G1Q.B which is 100% sequence identical.

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View how chain 3V81.D compares with the representative chain PDP:4G1QBa. Select a comparison method:


Entity #3 | Chains E,T

Description: DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains F,P

Description: DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') dna | Length: 21

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References