Structural Similarities for the Entities in PDB 3V79

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains K

Description: Neurogenic locus notch homolog protein 1 protein | Length: 256

No structure alignment results are available for 3V79.K explicitly.

It is represented by chain 1YYH.A which is 100% sequence identical.

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Entity #2 | Chains C

Description: Recombining binding protein suppressor of hairless protein | Length: 434

No structure alignment results are available for 3V79.C explicitly.

It is represented by chain 3IAG.C which has more than 95% sequence identity.

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Entity #3 | Chains M

Description: Mastermind-like protein 1 protein | Length: 63

No structure alignment results are available for 3V79.M explicitly.

It is represented by chain 2F8X.M which is 100% sequence identical.

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Entity #4 | Chains X

Description: DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains Y

Description: DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains R

Description: RAM protein | Length: 19

This entity is too short to be considered for the all vs. all structure alignments.


References