Structural Similarities for the Entities in PDB 3UQY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-10-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains S,T

Description: Hydrogenase-1 small chain protein | Length: 335

No structure alignment results are available for 3UQY.S, 3UQY.T explicitly.

These chains are represented by chain 5ADU.S which is 100% sequence identical.

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View how chain 3UQY.T compares with the representative chain PDP:5ADUSa. Select a comparison method:


Entity #2 | Chains L,M

Description: Hydrogenase-1 large chain protein | Length: 582

No structure alignment results are available for 3UQY.L, 3UQY.M explicitly.

These chains are represented by chain 4U9H.L which has more than 40% sequence identity.

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View how chain 3UQY.M compares with the representative chain PDP:4U9HLa. Select a comparison method:


References