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Structure of Arp2/3 complex with bound inhibitor CK-869
3UKU

Structural Similarities for the Entities in PDB 3UKU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Entity #1: Chains: A
Description: ACTIN-LIKE PROTEIN 3 protein
Length: 418
No structure alignment results are available for 3UKU.A explicitly.

It is represented by chain 1K8K.A which is 100% sequence identical.

 Click here to show the structure comparison results for representative 1K8K.A

 
 
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To see how chain 3UKU.A compares with the representative chain d1k8ka1 select a method below:





Entity #2: Chains: B
Description: ACTIN-LIKE PROTEIN 2 protein
Length: 394
No structure alignment results are available for 3UKU.B explicitly.

It is represented by chain 4CBU.A which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 4CBU.A

 
 
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To see how chain 3UKU.B compares with the representative chain PDP:4CBUAa select a method below:





Entity #3: Chains: C
Description: Actin-related protein 2/3 complex subunit 1B protein
Length: 372
No structure alignment results are available for 3UKU.C explicitly.

It is represented by chain 1K8K.C which has more than 95% sequence identity.

 Click here to show the structure comparison results for representative 1K8K.C

 
 
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To see how chain 3UKU.C compares with the representative chain d1k8kc_ select a method below:





Entity #4: Chains: D
Description: Actin-related protein 2/3 complex subunit 2 protein
Length: 300
No structure alignment results are available for 3UKU.D explicitly.

It is represented by chain 1K8K.D which is 100% sequence identical.

 Click here to show the structure comparison results for representative 1K8K.D

 
 
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To see how chain 3UKU.D compares with the representative chain d1k8kd1 select a method below:





Entity #5: Chains: E
Description: Actin-related protein 2/3 complex subunit 3 protein
Length: 178
No structure alignment results are available for 3UKU.E explicitly.

It is represented by chain 1K8K.E which is 100% sequence identical.

 Click here to show the structure comparison results for representative 1K8K.E

 
 
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To see how chain 3UKU.E compares with the representative chain d1k8ke_ select a method below:





Entity #6: Chains: F
Description: Actin-related protein 2/3 complex subunit 4 protein
Length: 168
No structure alignment results are available for 3UKU.F explicitly.

It is represented by chain 1K8K.F which is 100% sequence identical.

 Click here to show the structure comparison results for representative 1K8K.F

 
 
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To see how chain 3UKU.F compares with the representative chain d1k8kf_ select a method below:





Entity #7: Chains: G
Description: Actin-related protein 2/3 complex subunit 5 protein
Length: 151
No structure alignment results are available for 3UKU.G explicitly.

It is represented by chain 1K8K.G which has more than 95% sequence identity.

 Click here to show the structure comparison results for representative 1K8K.G

 
 
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To see how chain 3UKU.G compares with the representative chain d1k8kg_ select a method below:





  • Update Status Hide
    Nov 18 2014

    Cluster data are up-to-date as of:
     
  • Table Legend Hide
    • Rank: current row position. Changes with different sorting orders and filter rules
    • Domain 2: Domain name of 2nd domain. Can be either a SCOP ID (d<PDB ID><Chain ID><Domain ID>), ProteinDomainParser ID (PDP:<PDB ID><Chain ID><Domain ID>)
    • Title: Protein chain description
    • P-value: P-value of this alignment (FATCAT) (default sorted by this)
    • Score: Raw alignment score (FATCAT)
    • RMSD: RMSD value of the alignment
    • Len1: Domain 1 length
    • Len2: Domain 2 length
    • %ID: % sequence identity in the alignment. A 40% sequence identity filter is applied before the structure alignments are calculated, so most results show low similarity. If the sequences are of vastly different lengths, the clustering procedure will group them in different clusters, even if they share a region of high sequence similarity.
    • %Cov1: The coverage, or %, of aligned residues in chain 1
    • %Cov2: The coverage, or %, of aligned residues in chain 2

    The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results lense img icon to apply other filtering criteria.

     
Comparison Tool

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Documentation

A detailed description of the procedure for the all vs. all alignments is available.