Structural Similarities for the Entities in PDB 3U4E

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: May-10-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains G,J

Description: V1V2 region of HIV-1 on 1FD6 scaffold protein | Length: 124

No structure alignment results are available for 3U4E.G, 3U4E.J explicitly.

These chains are represented by chain 3U2S.C which has more than 70% sequence identity.

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View how chain 3U4E.J compares with the representative chain PDP:3U2SCa. Select a comparison method:


Entity #2 | Chains A,H

Description: PG9 Heavy Chain protein | Length: 248

No structure alignment results are available for 3U4E.A, 3U4E.H explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #3 | Chains B,L

Description: PG9 Light Chain protein | Length: 216

No structure alignment results are available for 3U4E.B, 3U4E.L explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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References