Structural Similarities for the Entities in PDB 3SN6

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Guanine nucleotide-binding protein G(s) subunit alpha isoforms short protein | Length: 380

No structure alignment results are available for 3SN6.A explicitly.

It is represented by chain 4N0D.A which has more than 40% sequence identity.

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Entity #2 | Chains B

Description: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein | Length: 351

No structure alignment results are available for 3SN6.B explicitly.

It is represented by chain 5KDO.B which is 100% sequence identical.

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Entity #3 | Chains G

Description: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein | Length: 68

No structure alignment results are available for 3SN6.G explicitly.

It is represented by chain 3V5W.G which is 100% sequence identical.

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Entity #4 | Chains R

Description: Lysozyme, Beta-2 adrenergic receptor protein | Length: 514

No structure alignment results are available for 3SN6.R explicitly.

It is represented by chain 4LDE.A which has more than 90% sequence identity.

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Entity #5 | Chains N

Description: Camelid antibody VHH fragment protein | Length: 138

No structure alignment results are available for 3SN6.N explicitly.

It is represented by chain 4UNU.A which has more than 40% sequence identity.

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References