The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment  is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser .
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Jun-28-2016
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A detailed description of the procedure for the all vs. all alignments is available.
Description: DNA topoisomerase 4 subunit A protein |
These chains are
represented by chain 3ILW.A
which has more than 50% sequence identity.
View how chain 3RAE.B compares with the representative chain PDP:3ILWAa. Select a comparison method:
Description: DNA topoisomerase 4 subunit B protein |
These chains are
represented by chain 3M4I.A
which has more than 40% sequence identity.
View how chain 3RAE.D compares with the representative chain PDP:3M4IAa. Select a comparison method:
Description: 5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna |
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna |
Description: 5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna |
Description: 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna |
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