Structural Similarities for the Entities in PDB 3RAE

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-09-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: DNA topoisomerase 4 subunit A protein | Length: 496

No structure alignment results are available for 3RAE.A, 3RAE.B explicitly.

These chains are represented by chain 3ILW.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 3RAE.B compares with the representative chain PDP:3ILWAa. Select a comparison method:


Entity #2 | Chains C,D

Description: DNA topoisomerase 4 subunit B protein | Length: 268

No structure alignment results are available for 3RAE.C, 3RAE.D explicitly.

These chains are represented by chain 3M4I.A which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 3RAE.D compares with the representative chain PDP:3M4IAa. Select a comparison method:


Entity #3 | Chains E

Description: 5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains F

Description: 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains G

Description: 5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains H

Description: 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References