Structural Similarities for the Entities in PDB 3QNJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: Chaperone protein DnaK protein | Length: 219

No structure alignment results are available for 3QNJ.A, 3QNJ.B explicitly.

These chains are represented by chain 4F01.A which is 100% sequence identical.

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View how chain 3QNJ.B compares with the representative chain PDP:4F01Aa. Select a comparison method:

Entity #2 | Chains C,D

Description: antimicrobial peptide oncocin protein | Length: 19

This entity is too short to be considered for the all vs. all structure alignments.