Structural Similarities for the Entities in PDB 3QLV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,E,G,I

Description: Glutamate receptor, ionotropic kainate 5 protein | Length: 393

No structure alignment results are available for 3QLV.A, 3QLV.B, 3QLV.E, 3QLV.G, 3QLV.I explicitly.

These chains are represented by chain 3OM0.A which is 100% sequence identical.

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View how chain 3QLV.I compares with the representative chain PDP:3OM0Aa. Select a comparison method:


Entity #2 | Chains C,D,F,H,J

Description: Glutamate receptor, ionotropic kainate 2 protein | Length: 395

No structure alignment results are available for 3QLV.C, 3QLV.D, 3QLV.F, 3QLV.H, 3QLV.J explicitly.

These chains are represented by chain 3H6G.A which is 100% sequence identical.

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View how chain 3QLV.J compares with the representative chain PDP:3H6GAa. Select a comparison method:


References