Structural Similarities for the Entities in PDB 3OQM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: Catabolite control protein A protein | Length: 339

No structure alignment results are available for 3OQM.A, 3OQM.C explicitly.

These chains are represented by chain 2O20.A which has more than 50% sequence identity.

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View how chain 3OQM.C compares with the representative chain PDP:2O20Aa. Select a comparison method:


Entity #2 | Chains D,S

Description: Phosphocarrier protein HPr protein | Length: 87

No structure alignment results are available for 3OQM.D, 3OQM.S explicitly.

These chains are represented by chain 3CCD.A which has more than 40% sequence identity.

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View how chain 3OQM.S compares with the representative chain PDP:3CCDAa. Select a comparison method:


Entity #3 | Chains E

Description: 5'-D(*TP*TP*GP*TP*AP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*A)-3' dna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains B

Description: 5'-D(*TP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*TP*AP*CP*AP*A)-3' dna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References