Structural Similarities for the Entities in PDB 3OL6

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E,I,M

Description: Polymerase protein | Length: 471

No structure alignment results are available for 3OL6.A, 3OL6.E, 3OL6.I, 3OL6.M explicitly.

These chains are represented by chain 4ZP6.A which has more than 70% sequence identity.

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View how chain 3OL6.M compares with the representative chain PDP:4ZP6Aa. Select a comparison method:


Entity #2 | Chains B,F,J,N

Description: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3') rna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C,G,K,O

Description: RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3') rna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains D,H,L,P

Description: RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') rna | Length: 9

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References