Structural Similarities for the Entities in PDB 3OD8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H

Description: Poly [ADP-ribose] polymerase 1 protein | Length: 116

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Entity #2 | Chains I,K,M,O

Description: 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains J,L,N,P

Description: 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References