Structural Similarities for the Entities in PDB 3NVI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: NOP5/NOP56 related protein protein | Length: 379

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Entity #2 | Chains B,D

Description: 50S ribosomal protein L7Ae protein | Length: 129

No structure alignment results are available for 3NVI.B, 3NVI.D explicitly.

These chains are represented by chain 1XBI.a which has more than 50% sequence identity.

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View how chain 3NVI.D compares with the representative chain d1xbia1. Select a comparison method:


Entity #3 | Chains E,F

Description: RNA (5'-R(*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3') rna | Length: 24

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References