Structural Similarities for the Entities in PDB 3NGB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,I

Description: Envelope glycoprotein gp160 protein | Length: 353

No structure alignment results are available for 3NGB.A, 3NGB.D, 3NGB.G, 3NGB.I explicitly.

These chains are represented by chain 4JZZ.A which has more than 70% sequence identity.

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View how chain 3NGB.I compares with the representative chain PDP:4JZZAa. Select a comparison method:


Entity #2 | Chains B,E,H,J

Description: Antigen binding fragment of heavy chain: Antibody VRC01 protein | Length: 224

No structure alignment results are available for 3NGB.B, 3NGB.E, 3NGB.H, 3NGB.J explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 3NGB.J compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains C,F,K,L

Description: Antigen binding fragment of light chain: Antibody VRC01 protein | Length: 210

No structure alignment results are available for 3NGB.C, 3NGB.F, 3NGB.K, 3NGB.L explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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View how chain 3NGB.L compares with the representative chain PDP:4NZULa. Select a comparison method:


References