The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
You can also use the structure comparison tool to compare any 2 given structures
Description: DNA topoisomerase 4 subunit A protein | Length: 496
These chains are represented by chain 3ILW.A which has more than 50% sequence identity.
View how chain 3LTN.B compares with the representative chain PDP:3ILWAa. Select a comparison method:
Description: DNA topoisomerase 4 subunit B protein | Length: 268
These chains are represented by chain 5IWI.B which has more than 50% sequence identity.
View how chain 3LTN.D compares with the representative chain PDP:5IWIBa. Select a comparison method:
Description: 5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3' dna | Length: 15
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3' dna | Length: 19
Description: 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3' dna | Length: 15
Description: 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3' dna | Length: 19