Structural Similarities for the Entities in PDB 3JWO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: HIV-1 GP120 ENVELOPE GLYCOPROTEIN protein | Length: 357

No structure alignment results are available for 3JWO.A explicitly.

It is represented by chain 4JZZ.A which has more than 70% sequence identity.

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View how chain 3JWO.A compares with the representative chain PDP:4JZZAa. Select a comparison method:


Entity #2 | Chains C

Description: T-cell surface glycoprotein CD4 protein | Length: 184

No structure alignment results are available for 3JWO.C explicitly.

It is represented by chain 4H8W.C which is 100% sequence identical.

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Entity #3 | Chains L

Description: FAB 48D LIGHT CHAIN protein | Length: 209

No structure alignment results are available for 3JWO.L explicitly.

It is represented by chain 4NZU.L which has more than 90% sequence identity.

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Entity #4 | Chains H

Description: FAB 48D Heavy CHAIN protein | Length: 220

No structure alignment results are available for 3JWO.H explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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References