Structural Similarities for the Entities in PDB 3J2W

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: Glycoprotein E1 protein | Length: 393

No structure alignment results are available for 3J2W.A, 3J2W.B, 3J2W.C, 3J2W.D explicitly.

These chains are represented by chain 3N40.F which is 100% sequence identical.

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View how chain 3J2W.D compares with the representative chain PDP:3N40Fa. Select a comparison method:


Entity #2 | Chains M,N,O,P

Description: Glycoprotein E2 protein | Length: 336

No structure alignment results are available for 3J2W.M, 3J2W.N, 3J2W.O, 3J2W.P explicitly.

These chains are represented by chain 3N44.B which is 100% sequence identical.

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View how chain 3J2W.P compares with the representative chain PDP:3N44Ba. Select a comparison method:


Entity #3 | Chains E,F,G,H

Description: Glycoprotein E1 protein | Length: 46

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Entity #4 | Chains Q,R,S,T

Description: Glycoprotein E2 protein | Length: 81

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Entity #5 | Chains I,J,K,L

Description: Capsid protein protein | Length: 149

No structure alignment results are available for 3J2W.I, 3J2W.J, 3J2W.K, 3J2W.L explicitly.

These chains are represented by chain 4AGK.A which has more than 50% sequence identity.

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View how chain 3J2W.L compares with the representative chain PDP:4AGKAa. Select a comparison method:


References