Structural Similarities for the Entities in PDB 3HT3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: DNA polymerase I, large fragment protein | Length: 579

No structure alignment results are available for 3HT3.A, 3HT3.D explicitly.

These chains are represented by chain 3TAN.A which has more than 95% sequence identity.

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View how chain 3HT3.D compares with the representative chain PDP:3TANAa. Select a comparison method:


Entity #2 | Chains B,E

Description: 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' dna | Length: 9

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C,F

Description: 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3' dna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References