Structural Similarities for the Entities in PDB 3GZN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: NEDD8-activating enzyme E1 regulatory subunit protein | Length: 534

No structure alignment results are available for 3GZN.A, 3GZN.C explicitly.

These chains are represented by chain 1YOV.a which is 100% sequence identical.

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View how chain 3GZN.C compares with the representative chain d1yova1. Select a comparison method:


Entity #2 | Chains B,D

Description: NEDD8-activating enzyme E1 catalytic subunit protein | Length: 463

No structure alignment results are available for 3GZN.B, 3GZN.D explicitly.

These chains are represented by chain 1YOV.b which is 100% sequence identical.

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View how chain 3GZN.D compares with the representative chain d1yovb1. Select a comparison method:


Entity #3 | Chains I,J

Description: NEDD8 protein | Length: 82

No structure alignment results are available for 3GZN.I, 3GZN.J explicitly.

These chains are represented by chain 4XOF.A which has more than 50% sequence identity.

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View how chain 3GZN.J compares with the representative chain PDP:4XOFAa. Select a comparison method:


References