The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
You can also use the structure comparison tool to compare any 2 given structures
Description: 23S ribosomal RNA rna | Length: 2923
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: 50S ribosomal protein L11P protein | Length: 70
Description: 50S ribosomal protein L13P protein | Length: 142
It is represented by chain 1J3A.a which has more than 40% sequence identity.
View how chain 3G6E.J compares with the representative chain d1j3aa_. Select a comparison method:
Description: 50S ribosomal protein L14P protein | Length: 132
It is represented by chain 1WHI.a which has more than 30% sequence identity.
View how chain 3G6E.K compares with the representative chain d1whia_. Select a comparison method:
Description: 50S ribosomal protein L15P protein | Length: 165
It is represented by chain XXXX.null which is 100% sequence identical.
View how chain 3G6E.L compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L15e protein | Length: 194
It is represented by chain XXXX.null which has more than 95% sequence identity.
View how chain 3G6E.M compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L18P protein | Length: 186
View how chain 3G6E.N compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L18e protein | Length: 115
View how chain 3G6E.O compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L19e protein | Length: 143
View how chain 3G6E.P compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L21e protein | Length: 95
View how chain 3G6E.Q compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L22P protein | Length: 150
View how chain 3G6E.R compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L2P protein | Length: 237
View how chain 3G6E.A compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L23P protein | Length: 81
It is represented by chain XXXX.null which has more than 40% sequence identity.
View how chain 3G6E.S compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L24P protein | Length: 119
View how chain 3G6E.T compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L24e protein | Length: 53
Description: 50S ribosomal protein L29P protein | Length: 65
View how chain 3G6E.V compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L30P protein | Length: 154
View how chain 3G6E.W compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L31e protein | Length: 82
View how chain 3G6E.X compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L32e protein | Length: 142
Description: 50S ribosomal protein L37Ae protein | Length: 73
It is represented by chain 1S72.z which is 100% sequence identical.
View how chain 3G6E.Z compares with the representative chain d1s72z_. Select a comparison method:
Description: 50S ribosomal protein L37e protein | Length: 56
View how chain 3G6E.1 compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L39e protein | Length: 50
View how chain 3G6E.2 compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L3P protein | Length: 337
View how chain 3G6E.B compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L44E protein | Length: 92
View how chain 3G6E.3 compares with the representative chain xxxx. Select a comparison method:
Description: 5S ribosomal RNA rna | Length: 122
Description: 50S ribosomal protein L4P protein | Length: 246
View how chain 3G6E.C compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L5P protein | Length: 177
View how chain 3G6E.D compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L6P protein | Length: 172
View how chain 3G6E.E compares with the representative chain xxxx. Select a comparison method:
Description: 50S ribosomal protein L7Ae protein | Length: 119
It is represented by chain 1XBI.a which has more than 50% sequence identity.
View how chain 3G6E.F compares with the representative chain d1xbia1. Select a comparison method:
Description: 50S ribosomal protein L10E protein | Length: 348
It is represented by chain 1VQO.g which is 100% sequence identical.
View how chain 3G6E.G compares with the representative chain d1vqog1. Select a comparison method:
Description: 50S ribosomal protein L10e protein | Length: 177
View how chain 3G6E.H compares with the representative chain xxxx. Select a comparison method: