Structural Similarities for the Entities in PDB 3DNV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-09-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Protein hipA protein | Length: 440

No structure alignment results are available for 3DNV.A explicitly.

It is represented by chain 3DNU.A which is 100% sequence identical.

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View how chain 3DNV.A compares with the representative chain PDP:3DNUAa. Select a comparison method:


Entity #2 | Chains B

Description: HTH-type transcriptional regulator hipB protein | Length: 88

No structure alignment results are available for 3DNV.B explicitly.

It is represented by chain 2WIU.B which is 100% sequence identical.

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View how chain 3DNV.B compares with the representative chain PDP:2WIUBa. Select a comparison method:


Entity #3 | Chains T

Description: DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna | Length: 21

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References