Structural Similarities for the Entities in PDB 3BRD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains B

Description: DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') dna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains C

Description: DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') dna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: Lin-12 and glp-1 phenotype protein 1, isoform a protein | Length: 477

No structure alignment results are available for 3BRD.A explicitly.

It is represented by chain 3IAG.C which has more than 50% sequence identity.

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View how chain 3BRD.A compares with the representative chain PDP:3IAGCa. Select a comparison method:


Entity #4 | Chains D

Description: Protein lin-12 protein | Length: 29

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References