Structural Similarities for the Entities in PDB 2YPT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,D,E

Description: CAAX PRENYL PROTEASE 1 HOMOLOG protein | Length: 482

No structure alignment results are available for 2YPT.A, 2YPT.B, 2YPT.D, 2YPT.E explicitly.

These chains are represented by chain 5SYT.A which has more than 95% sequence identity.

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View how chain 2YPT.E compares with the representative chain PDP:5SYTAa. Select a comparison method:

Entity #2 | Chains F,G,H,I

Description: PRELAMIN-A/C protein | Length: 4

This entity is too short to be considered for the all vs. all structure alignments.