Structural Similarities for the Entities in PDB 2YME

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J

Description: SOLUBLE ACETYLCHOLINE RECEPTOR protein | Length: 205

No structure alignment results are available for 2YME.A, 2YME.B, 2YME.C, 2YME.D, 2YME.E, 2YME.F, 2YME.G, 2YME.H, 2YME.I, 2YME.J explicitly.

These chains are represented by chain 2WN9.A which has more than 95% sequence identity.

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View how chain 2YME.J compares with the representative chain PDP:2WN9Aa. Select a comparison method:


References