Structural Similarities for the Entities in PDB 2XWB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: COMPLEMENT C3B BETA CHAIN protein | Length: 642

No structure alignment results are available for 2XWB.A, 2XWB.C explicitly.

These chains are represented by chain 3HRZ.A which has more than 40% sequence identity.

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View how chain 2XWB.C compares with the representative chain PDP:3HRZAa. Select a comparison method:


Entity #2 | Chains B,D

Description: COMPLEMENT C3B ALPHA' CHAIN protein | Length: 912

No structure alignment results are available for 2XWB.B, 2XWB.D explicitly.

These chains are represented by chain 5FO8.B which is 100% sequence identical.

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View how chain 2XWB.D compares with the representative chain PDP:5FO8Ba. Select a comparison method:


Entity #3 | Chains F,H

Description: COMPLEMENT FACTOR B protein | Length: 732

No structure alignment results are available for 2XWB.F, 2XWB.H explicitly.

These chains are represented by chain 3HRZ.D which is 100% sequence identical.

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View how chain 2XWB.H compares with the representative chain PDP:3HRZDa. Select a comparison method:


Entity #4 | Chains I,J

Description: COMPLEMENT FACTOR D protein | Length: 228

No structure alignment results are available for 2XWB.I, 2XWB.J explicitly.

These chains are represented by chain 4I8H.A which has more than 40% sequence identity.

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View how chain 2XWB.J compares with the representative chain PDP:4I8HAa. Select a comparison method:


References