Structural Similarities for the Entities in PDB 2WQA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: TRANSTHYRETIN protein | Length: 129

No structure alignment results are available for 2WQA.A, 2WQA.B, 2WQA.C, 2WQA.D explicitly.

These chains are represented by chain 1F86.a which has more than 95% sequence identity.

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View how chain 2WQA.D compares with the representative chain d1f86a_. Select a comparison method:


Entity #2 | Chains E,F

Description: RETINOL-BINDING PROTEIN 4 protein | Length: 177

No structure alignment results are available for 2WQA.E, 2WQA.F explicitly.

These chains are represented by chain 1KT6.a which has more than 90% sequence identity.

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View how chain 2WQA.F compares with the representative chain d1kt6a_. Select a comparison method:


References