Structural Similarities for the Entities in PDB 2WIN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: COMPLEMENT C3 BETA CHAIN protein | Length: 645

No structure alignment results are available for 2WIN.A, 2WIN.C, 2WIN.E, 2WIN.G explicitly.

These chains are represented by chain 3HRZ.A which has more than 40% sequence identity.

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View how chain 2WIN.G compares with the representative chain PDP:3HRZAa. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: COMPLEMENT C3B ALPHA' CHAIN protein | Length: 915

No structure alignment results are available for 2WIN.B, 2WIN.D, 2WIN.F, 2WIN.H explicitly.

These chains are represented by chain 2WII.B which is 100% sequence identical.

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View how chain 2WIN.H compares with the representative chain PDP:2WIIBa. Select a comparison method:


Entity #3 | Chains I,J,K,L

Description: COMPLEMENT FACTOR B protein | Length: 507

No structure alignment results are available for 2WIN.I, 2WIN.J, 2WIN.K, 2WIN.L explicitly.

These chains are represented by chain 1RRK.A which has more than 95% sequence identity.

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Entity #4 | Chains M,N,P,Q

Description: STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein | Length: 92

No structure alignment results are available for 2WIN.M, 2WIN.N, 2WIN.P, 2WIN.Q explicitly.

These chains are represented by chain 2QFF.A which is 100% sequence identical.

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References