Structural Similarities for the Entities in PDB 2VQE

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 16S RRNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: 30S RIBOSOMAL PROTEIN S10 protein | Length: 105

No structure alignment results are available for 2VQE.J explicitly.

It is represented by chain 3D3B.J which has more than 50% sequence identity.

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Entity #11 | Chains K

Description: 30S RIBOSOMAL PROTEIN S11 protein | Length: 129

No structure alignment results are available for 2VQE.K explicitly.

It is represented by chain 4CVN.E which has more than 40% sequence identity.

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Entity #12 | Chains L

Description: 30S RIBOSOMAL PROTEIN S12 protein | Length: 135

No structure alignment results are available for 2VQE.L explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #13 | Chains M

Description: 30S RIBOSOMAL PROTEIN S13 protein | Length: 126

No structure alignment results are available for 2VQE.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains N

Description: 30S RIBOSOMAL PROTEIN S14 TYPE Z protein | Length: 61

No structure alignment results are available for 2VQE.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains O

Description: 30S RIBOSOMAL PROTEIN S15 protein | Length: 89

No structure alignment results are available for 2VQE.O explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #16 | Chains P

Description: 30S RIBOSOMAL PROTEIN S16 protein | Length: 88

No structure alignment results are available for 2VQE.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Q

Description: 30S RIBOSOMAL PROTEIN S17 protein | Length: 105

No structure alignment results are available for 2VQE.Q explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #18 | Chains R

Description: 30S RIBOSOMAL PROTEIN S18 protein | Length: 88

No structure alignment results are available for 2VQE.R explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #19 | Chains S

Description: 30S RIBOSOMAL PROTEIN S19 protein | Length: 93

No structure alignment results are available for 2VQE.S explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains B

Description: 30S RIBOSOMAL PROTEIN S2 protein | Length: 256

No structure alignment results are available for 2VQE.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains T

Description: 30S RIBOSOMAL PROTEIN S20 protein | Length: 106

No structure alignment results are available for 2VQE.T explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #21 | Chains U

Description: 30S RIBOSOMAL PROTEIN THX protein | Length: 27

No structure alignment results are available for 2VQE.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains X

Description: 5'-R(*UP*UP*AP*AP*AP*AP)-3' rna | Length: 6

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains Y

Description: 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: 30S RIBOSOMAL PROTEIN S3 protein | Length: 239

No structure alignment results are available for 2VQE.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains D

Description: 30S RIBOSOMAL PROTEIN S4 protein | Length: 209

No structure alignment results are available for 2VQE.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains E

Description: 30S RIBOSOMAL PROTEIN S5 protein | Length: 162

No structure alignment results are available for 2VQE.E explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #6 | Chains F

Description: 30S RIBOSOMAL PROTEIN S6 protein | Length: 101

No structure alignment results are available for 2VQE.F explicitly.

It is represented by chain 1CQM.A which has more than 95% sequence identity.

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Entity #7 | Chains G

Description: 30S RIBOSOMAL PROTEIN S7 protein | Length: 156

No structure alignment results are available for 2VQE.G explicitly.

It is represented by chain 1RSS.A which is 100% sequence identical.

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Entity #8 | Chains H

Description: 30S RIBOSOMAL PROTEIN S8 protein | Length: 138

No structure alignment results are available for 2VQE.H explicitly.

It is represented by chain 1SEI.A which has more than 95% sequence identity.

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Entity #9 | Chains I

Description: 30S RIBOSOMAL PROTEIN S9 protein | Length: 128

No structure alignment results are available for 2VQE.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References