Structural Similarities for the Entities in PDB 2TMV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-24-2015

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains R

Description: RNA (5'-R(P*GP*AP*A)-3') rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains P

Description: TMV COAT PROTEIN protein | Length: 158

No structure alignment results are available for 2TMV.P explicitly.

It is represented by chain 1EI7.A which is 100% sequence identical.

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View how chain 2TMV.P compares with the representative chain d1ei7a_. Select a comparison method: