Structural Similarities for the Entities in PDB 2QAD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E

Description: Envelope glycoprotein gp160 protein | Length: 322

No structure alignment results are available for 2QAD.A, 2QAD.E explicitly.

These chains are represented by chain 4JZZ.A which has more than 70% sequence identity.

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View how chain 2QAD.E compares with the representative chain PDP:4JZZAa. Select a comparison method:


Entity #2 | Chains B,F

Description: T-cell surface glycoprotein CD4 protein | Length: 181

No structure alignment results are available for 2QAD.B, 2QAD.F explicitly.

These chains are represented by chain 4H8W.C which is 100% sequence identical.

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View how chain 2QAD.F compares with the representative chain PDP:4H8WCa. Select a comparison method:


Entity #3 | Chains C,G

Description: anti-HIV-1 antibody 412d light chain protein | Length: 214

No structure alignment results are available for 2QAD.C, 2QAD.G explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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View how chain 2QAD.G compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #4 | Chains D,H

Description: anti-HIV-1 antibody 412d heavy chain protein | Length: 231

No structure alignment results are available for 2QAD.D, 2QAD.H explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2QAD.H compares with the representative chain PDP:4NZULa. Select a comparison method:


References