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STRUCTURAL FACTORS THAT CONTROL CONFORMATIONAL TRANSITIONS AND SEROTYPE SPECIFICITY IN TYPE 3 POLIOVIRUS
2PLV

Structural Similarities for the Entities in PDB 2PLV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Entity #1: Chains: 1
Description: HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1) protein
Length: 302
No structure alignment results are available for 2PLV.1 explicitly.

It is represented by chain 1AYM.1 which is 100% sequence identical.

 Click here to show the structure comparison results for representative 1AYM.1

 
 
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To see how chain 2PLV.1 compares with the representative chain d1aym1_ select a method below:





Entity #2: Chains: 2
Description: HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2) protein
Length: 272
No structure alignment results are available for 2PLV.2 explicitly.

It is represented by chain 1AYM.. which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 1AYM..

 
 
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To see how chain 2PLV.2 compares with the representative chain d1aym.1 select a method below:





Entity #3: Chains: 3
Description: HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP3) protein
Length: 238
No structure alignment results are available for 2PLV.3 explicitly.

It is represented by chain 1AYM.3 which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 1AYM.3

 
 
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To see how chain 2PLV.3 compares with the representative chain d1aym3_ select a method below:





Entity #4: Chains: 4
Description: HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP4) protein
Length: 68
No structure alignment results are available for 2PLV.4 explicitly.

It is represented by chain 1AYM.. which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 1AYM..

 
 
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To see how chain 2PLV.4 compares with the representative chain d1aym.1 select a method below:





  • Update Status Hide
    Sep 02 2014

    Cluster data are up-to-date as of:
     
  • Table Legend Hide
    • Rank: current row position. Changes with different sorting orders and filter rules
    • Domain 2: Domain name of 2nd domain. Can be either a SCOP ID (d<PDB ID><Chain ID><Domain ID>), ProteinDomainParser ID (PDP:<PDB ID><Chain ID><Domain ID>)
    • Title: Protein chain description
    • P-value: P-value of this alignment (FATCAT) (default sorted by this)
    • Score: Raw alignment score (FATCAT)
    • RMSD: RMSD value of the alignment
    • Len1: Domain 1 length
    • Len2: Domain 2 length
    • %ID: % sequence identity in the alignment. A 40% sequence identity filter is applied before the structure alignments are calculated, so most results show low similarity. If the sequences are of vastly different lengths, the clustering procedure will group them in different clusters, even if they share a region of high sequence similarity.
    • %Cov1: The coverage, or %, of aligned residues in chain 1
    • %Cov2: The coverage, or %, of aligned residues in chain 2

    The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results lense img icon to apply other filtering criteria.

     
Comparison Tool

Calculate pairwise sequence or structure alignments.

PDB 1: Chain 1: ...
PDB 2: Chain 2: ...
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Documentation

A detailed description of the procedure for the all vs. all alignments is available.