Structural Similarities for the Entities in PDB 2NXZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: ENVELOPE GLYCOPROTEIN GP120 protein | Length: 317

No structure alignment results are available for 2NXZ.A explicitly.

It is represented by chain 2NXY.A which has more than 95% sequence identity.

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View how chain 2NXZ.A compares with the representative chain d2nxya1. Select a comparison method:


Entity #2 | Chains B

Description: T-cell surface glycoprotein CD4 protein | Length: 184

No structure alignment results are available for 2NXZ.B explicitly.

It is represented by chain 4H8W.C which is 100% sequence identical.

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View how chain 2NXZ.B compares with the representative chain PDP:4H8WCa. Select a comparison method:


Entity #3 | Chains C

Description: ANTIBODY 17B, LIGHT CHAIN protein | Length: 214

No structure alignment results are available for 2NXZ.C explicitly.

It is represented by chain 4NZU.L which has more than 90% sequence identity.

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View how chain 2NXZ.C compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #4 | Chains D

Description: ANTIBODY 17B, HEAVY CHAIN protein | Length: 229

No structure alignment results are available for 2NXZ.D explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2NXZ.D compares with the representative chain PDP:4NZULa. Select a comparison method:


References