The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)
Structural Similarities for the Entities in PDB 2NL8
The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment  is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser .
Entity #1: Chains: W
This entity is not a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Entity #2: Chains: A
No structure alignment results are available for 2NL8.A explicitly.
It is represented by chain 4NBP.A which has more than 70% sequence identity.
Calculate pairwise sequence or structure alignments.
A detailed description of the procedure for the all vs. all alignments is available.