Structural Similarities for the Entities in PDB 2LTQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: Disulfide bond formation protein B protein | Length: 176

No structure alignment results are available for 2LTQ.A, 2LTQ.D explicitly.

These chains are represented by chain 2ZUQ.A which is 100% sequence identical.

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View how chain 2LTQ.D compares with the representative chain PDP:2ZUQAa. Select a comparison method:


Entity #2 | Chains B,E

Description: Fab fragment light chain protein | Length: 239

No structure alignment results are available for 2LTQ.B, 2LTQ.E explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2LTQ.E compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains C,F

Description: Fab fragment heavy chain protein | Length: 221

No structure alignment results are available for 2LTQ.C, 2LTQ.F explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2LTQ.F compares with the representative chain PDP:4NZULa. Select a comparison method:


References