Structural Similarities for the Entities in PDB 2HMI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E

Description: DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna | Length: 19

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains F

Description: DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein | Length: 558

No structure alignment results are available for 2HMI.A explicitly.

It is represented by chain 4G1Q.A which has more than 95% sequence identity.

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View how chain 2HMI.A compares with the representative chain PDP:4G1QAa. Select a comparison method:


Entity #4 | Chains B

Description: HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein | Length: 430

No structure alignment results are available for 2HMI.B explicitly.

It is represented by chain 4G1Q.B which is 100% sequence identical.

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View how chain 2HMI.B compares with the representative chain PDP:4G1QBa. Select a comparison method:


Entity #5 | Chains C

Description: FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein | Length: 214

No structure alignment results are available for 2HMI.C explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #6 | Chains D

Description: FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein | Length: 220

No structure alignment results are available for 2HMI.D explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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References