Structural Similarities for the Entities in PDB 2FAK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,O

Description: Proteasome component Y7 protein | Length: 250

No structure alignment results are available for 2FAK.A, 2FAK.O explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #10 | Chains J,X

Description: Proteasome component C11 protein | Length: 198

No structure alignment results are available for 2FAK.J, 2FAK.X explicitly.

These chains are represented by chain 4R17.J which is 100% sequence identical.

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Entity #11 | Chains K,Y

Description: Proteasome component PRE2 protein | Length: 212

No structure alignment results are available for 2FAK.K, 2FAK.Y explicitly.

These chains are represented by chain 4R17.K which is 100% sequence identical.

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Entity #12 | Chains L,Z

Description: Proteasome component C5 protein | Length: 222

No structure alignment results are available for 2FAK.L, 2FAK.Z explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

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Entity #13 | Chains 1,M

Description: Proteasome component PRE4 protein | Length: 233

No structure alignment results are available for 2FAK.1, 2FAK.M explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

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Entity #14 | Chains 2,N

Description: Proteasome component PRE3 protein | Length: 196

No structure alignment results are available for 2FAK.2, 2FAK.N explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

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Entity #2 | Chains B,P

Description: Proteasome component Y13 protein | Length: 244

No structure alignment results are available for 2FAK.B, 2FAK.P explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #3 | Chains C,Q

Description: Proteasome component PRE6 protein | Length: 241

No structure alignment results are available for 2FAK.C, 2FAK.Q explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #4 | Chains D,R

Description: Proteasome component PUP2 protein | Length: 242

No structure alignment results are available for 2FAK.D, 2FAK.R explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #5 | Chains E,S

Description: Proteasome component PRE5 protein | Length: 233

No structure alignment results are available for 2FAK.E, 2FAK.S explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

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Entity #6 | Chains F,T

Description: Proteasome component C1 protein | Length: 244

No structure alignment results are available for 2FAK.F, 2FAK.T explicitly.

These chains are represented by chain 1RYP.g which is 100% sequence identical.

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Entity #7 | Chains G,U

Description: Proteasome component C7-alpha protein | Length: 243

No structure alignment results are available for 2FAK.G, 2FAK.U explicitly.

These chains are represented by chain 4R17.G which is 100% sequence identical.

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Entity #8 | Chains H,V

Description: Proteasome component PUP1 protein | Length: 222

No structure alignment results are available for 2FAK.H, 2FAK.V explicitly.

These chains are represented by chain 4R17.H which is 100% sequence identical.

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Entity #9 | Chains I,W

Description: Proteasome component PUP3 protein | Length: 204

No structure alignment results are available for 2FAK.I, 2FAK.W explicitly.

These chains are represented by chain 4R17.I which is 100% sequence identical.

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References