Structural Similarities for the Entities in PDB 2CGT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L,M,N

Description: 60 KDA GROEL protein | Length: 547

No structure alignment results are available for 2CGT.A, 2CGT.B, 2CGT.C, 2CGT.D, 2CGT.E, 2CGT.F, 2CGT.G, 2CGT.H, 2CGT.I, 2CGT.J, 2CGT.K, 2CGT.L, 2CGT.M, 2CGT.N explicitly.

These chains are represented by chain 1KP8.a which has more than 95% sequence identity.

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View how chain 2CGT.N compares with the representative chain d1kp8a1. Select a comparison method:


Entity #2 | Chains O,P,Q,R,S,T,U

Description: CAPSID ASSEMBLY PROTEIN GP31 protein | Length: 111

No structure alignment results are available for 2CGT.O, 2CGT.P, 2CGT.Q, 2CGT.R, 2CGT.S, 2CGT.T, 2CGT.U explicitly.

These chains are represented by chain 1G31.a which is 100% sequence identical.

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View how chain 2CGT.U compares with the representative chain d1g31a_. Select a comparison method:


References