Structural Similarities for the Entities in PDB 2BRR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-03-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains H,Y

Description: MN20B9.34 ANTI-P1.4 ANTIBODY, FAB HEAVY CHAIN protein | Length: 225

No structure alignment results are available for 2BRR.H, 2BRR.Y explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2BRR.Y compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains L,X

Description: MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN protein | Length: 215

No structure alignment results are available for 2BRR.L, 2BRR.X explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2BRR.X compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains P

Description: CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2 protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


References