Structural Similarities for the Entities in PDB 1ZR4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains J,M,U,X

Description: TCAGTGTCCGATAATTTAT dna | Length: 19

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains I,O,W,Z

Description: AAA dna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains K,N,V,Y

Description: TTATCGGACACTG dna | Length: 13

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A,B,D,E

Description: Transposon gamma-delta resolvase protein | Length: 183

No structure alignment results are available for 1ZR4.A, 1ZR4.B, 1ZR4.D, 1ZR4.E explicitly.

These chains are represented by chain 1GDT.A which has more than 95% sequence identity.

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View how chain 1ZR4.E compares with the representative chain d1gdta1. Select a comparison method:


References