Structural Similarities for the Entities in PDB 1ZBB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains I

Description: DNA STRAND 1 (ARBITRARY MODEL SEQUENCE) dna | Length: 347

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains J

Description: DNA STRAND 2 (ARBITRARY MODEL SEQUENCE) dna | Length: 347

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,E,a,e

Description: HISTONE H3 protein | Length: 135

No structure alignment results are available for 1ZBB.A, 1ZBB.E, 1ZBB.a, 1ZBB.e explicitly.

These chains are represented by chain 1TZY.c which has more than 95% sequence identity.

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View how chain 1ZBB.e compares with the representative chain d1tzyc_. Select a comparison method:


Entity #4 | Chains B,F,b,f

Description: Histone H4 protein | Length: 102

No structure alignment results are available for 1ZBB.B, 1ZBB.F, 1ZBB.b, 1ZBB.f explicitly.

These chains are represented by chain 1TZY.d which is 100% sequence identical.

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View how chain 1ZBB.f compares with the representative chain d1tzyd_. Select a comparison method:


Entity #5 | Chains C,G,c,g

Description: Histone H2A.1 protein | Length: 129

No structure alignment results are available for 1ZBB.C, 1ZBB.G, 1ZBB.c, 1ZBB.g explicitly.

These chains are represented by chain 4CAY.A which has more than 50% sequence identity.

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View how chain 1ZBB.g compares with the representative chain PDP:4CAYAa. Select a comparison method:


Entity #6 | Chains D,H,d,h

Description: Histone H2B.1 protein | Length: 125

No structure alignment results are available for 1ZBB.D, 1ZBB.H, 1ZBB.d, 1ZBB.h explicitly.

These chains are represented by chain 1TZY.b which has more than 95% sequence identity.

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View how chain 1ZBB.h compares with the representative chain d1tzyb_. Select a comparison method:


References