Structural Similarities for the Entities in PDB 1YYL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains G,P

Description: Exterior membrane glycoprotein(GP120) protein | Length: 313

No structure alignment results are available for 1YYL.G, 1YYL.P explicitly.

These chains are represented by chain 4JZZ.A which has more than 70% sequence identity.

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View how chain 1YYL.P compares with the representative chain PDP:4JZZAa. Select a comparison method:


Entity #2 | Chains L,Q

Description: antibody 17b light chain protein | Length: 214

No structure alignment results are available for 1YYL.L, 1YYL.Q explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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Entity #3 | Chains H,R

Description: antibody 17b heavy chain protein | Length: 229

No structure alignment results are available for 1YYL.H, 1YYL.R explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #4 | Chains M,S

Description: CD4M33, scorpion-toxin mimic of CD4 protein | Length: 27

No structure alignment results are available for 1YYL.M, 1YYL.S explicitly.

These chains are represented by chain 4JZZ.R which has more than 70% sequence identity.

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References