Structural Similarities for the Entities in PDB 1YM2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C

Description: Beta-secretase 1 protein | Length: 402

No structure alignment results are available for 1YM2.A, 1YM2.B, 1YM2.C explicitly.

These chains are represented by chain 4L7G.A which is 100% sequence identical.

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View how chain 1YM2.C compares with the representative chain PDP:4L7GAa. Select a comparison method:

Entity #2 | Chains X,Y,Z

Description: NVP-AUR200 INHIBITOR protein | Length: 6

This entity is too short to be considered for the all vs. all structure alignments.