Structural Similarities for the Entities in PDB 1VFB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: IGG1-KAPPA D1.3 FV (LIGHT CHAIN) protein | Length: 107

No structure alignment results are available for 1VFB.A explicitly.

It is represented by chain 4UNU.A which has more than 50% sequence identity.

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View how chain 1VFB.A compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #2 | Chains B

Description: IGG1-KAPPA D1.3 FV (HEAVY CHAIN) protein | Length: 116

No structure alignment results are available for 1VFB.B explicitly.

It is represented by chain 4UNU.A which has more than 40% sequence identity.

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View how chain 1VFB.B compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #3 | Chains C

Description: HEN EGG WHITE LYSOZYME protein | Length: 129

No structure alignment results are available for 1VFB.C explicitly.

It is represented by chain 2VB1.a which is 100% sequence identical.

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View how chain 1VFB.C compares with the representative chain d2vb1a1. Select a comparison method:


References