Structural Similarities for the Entities in PDB 1RYP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-10-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,O

Description: 20S PROTEASOME protein | Length: 243

No structure alignment results are available for 1RYP.A, 1RYP.O explicitly.

These chains are represented by chain 4R17.G which is 100% sequence identical.

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View how chain 1RYP.O compares with the representative chain PDP:4R17Ga. Select a comparison method:


Entity #10 | Chains J,X

Description: 20S PROTEASOME protein | Length: 204

No structure alignment results are available for 1RYP.J, 1RYP.X explicitly.

These chains are represented by chain 4R17.I which is 100% sequence identical.

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Entity #11 | Chains K,Y

Description: 20S PROTEASOME protein | Length: 198

No structure alignment results are available for 1RYP.K, 1RYP.Y explicitly.

These chains are represented by chain 4R17.J which is 100% sequence identical.

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View how chain 1RYP.Y compares with the representative chain PDP:4R17Ja. Select a comparison method:


Entity #12 | Chains L,Z

Description: 20S PROTEASOME protein | Length: 212

No structure alignment results are available for 1RYP.L, 1RYP.Z explicitly.

These chains are represented by chain 4R17.K which has more than 95% sequence identity.

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Entity #13 | Chains 1,M

Description: 20S PROTEASOME protein | Length: 222

No structure alignment results are available for 1RYP.1, 1RYP.M explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

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Entity #14 | Chains 2,N

Description: 20S PROTEASOME protein | Length: 233

No structure alignment results are available for 1RYP.2, 1RYP.N explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

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Entity #2 | Chains B,P

Description: 20S PROTEASOME protein | Length: 250

No structure alignment results are available for 1RYP.B, 1RYP.P explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #3 | Chains C,Q

Description: 20S PROTEASOME protein | Length: 244

No structure alignment results are available for 1RYP.C, 1RYP.Q explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #4 | Chains D,R

Description: 20S PROTEASOME protein | Length: 241

No structure alignment results are available for 1RYP.D, 1RYP.R explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #5 | Chains E,S

Description: 20S PROTEASOME protein | Length: 242

No structure alignment results are available for 1RYP.E, 1RYP.S explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #6 | Chains F,T

Description: 20S PROTEASOME protein | Length: 233

No structure alignment results are available for 1RYP.F, 1RYP.T explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

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Entity #7 | Chains G,U

Description: 20S PROTEASOME protein | Length: 244

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Entity #8 | Chains H,V

Description: 20S PROTEASOME protein | Length: 205

No structure alignment results are available for 1RYP.H, 1RYP.V explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

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Entity #9 | Chains I,W

Description: 20S PROTEASOME protein | Length: 222

No structure alignment results are available for 1RYP.I, 1RYP.W explicitly.

These chains are represented by chain 4R17.H which is 100% sequence identical.

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References