Structural Similarities for the Entities in PDB 1RTD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E,G

Description: DNA TEMPLATE FOR REVERSE TRANSCRIPTASE dna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains F,H

Description: DNA PRIMER FOR REVERSE TRANSCRIPTASE dna | Length: 21

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,C

Description: PROTEIN (REVERSE TRANSCRIPTASE) protein | Length: 554

No structure alignment results are available for 1RTD.A, 1RTD.C explicitly.

These chains are represented by chain 4G1Q.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1RTD.C compares with the representative chain PDP:4G1QAa. Select a comparison method:


Entity #4 | Chains B,D

Description: PROTEIN (REVERSE TRANSCRIPTASE) protein | Length: 440

No structure alignment results are available for 1RTD.B, 1RTD.D explicitly.

These chains are represented by chain 4G1Q.B which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1RTD.D compares with the representative chain PDP:4G1QBa. Select a comparison method:


References