Structural Similarities for the Entities in PDB 1RDT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Retinoic acid receptor RXR-alpha protein | Length: 242

No structure alignment results are available for 1RDT.A explicitly.

It is represented by chain 3CJW.A which has more than 40% sequence identity.

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View how chain 1RDT.A compares with the representative chain PDP:3CJWAa. Select a comparison method:


Entity #2 | Chains B

Description: LxxLL motif coactivator protein | Length: 25

No structure alignment results are available for 1RDT.B explicitly.

It is represented by chain 5HJS.C which is 100% sequence identical.

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View how chain 1RDT.B compares with the representative chain PDP:5HJSC_. Select a comparison method:


Entity #3 | Chains D

Description: Peroxisome proliferator activated receptor gamma protein | Length: 284

No structure alignment results are available for 1RDT.D explicitly.

It is represented by chain 3U9Q.A which is 100% sequence identical.

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View how chain 1RDT.D compares with the representative chain PDP:3U9QAa. Select a comparison method:


Entity #4 | Chains E

Description: LxxLL motif coactivator protein | Length: 23

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References