Structural Similarities for the Entities in PDB 1R4N

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: amyloid beta precursor protein-binding protein 1 protein | Length: 529

No structure alignment results are available for 1R4N.A, 1R4N.C, 1R4N.E, 1R4N.G explicitly.

These chains are represented by chain 1YOV.a which has more than 95% sequence identity.

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View how chain 1R4N.G compares with the representative chain d1yova1. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: ubiquitin-activating enzyme E1C protein | Length: 431

No structure alignment results are available for 1R4N.B, 1R4N.D, 1R4N.F, 1R4N.H explicitly.

These chains are represented by chain 1YOV.b which has more than 95% sequence identity.

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Entity #3 | Chains I,J,K,L

Description: Ubiquitin-like protein NEDD8 protein | Length: 76

No structure alignment results are available for 1R4N.I, 1R4N.J, 1R4N.K, 1R4N.L explicitly.

These chains are represented by chain 4XOF.A which has more than 30% sequence identity.

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View how chain 1R4N.L compares with the representative chain PDP:4XOFAa. Select a comparison method:


References