Structural Similarities for the Entities in PDB 1QO1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C

Description: ATP SYNTHASE ALPHA CHAIN protein | Length: 510

No structure alignment results are available for 1QO1.A, 1QO1.B, 1QO1.C explicitly.

These chains are represented by chain 2JDI.a which is 100% sequence identical.

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View how chain 1QO1.C compares with the representative chain d2jdia1. Select a comparison method:


Entity #2 | Chains D,E,F

Description: ATP SYNTHASE BETA CHAIN protein | Length: 482

No structure alignment results are available for 1QO1.D, 1QO1.E, 1QO1.F explicitly.

These chains are represented by chain 2JDI.d which is 100% sequence identical.

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Entity #3 | Chains G

Description: ATP SYNTHASE GAMMA CHAIN protein | Length: 272

No structure alignment results are available for 1QO1.G explicitly.

It is represented by chain 2JDI.g which is 100% sequence identical.

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Entity #4 | Chains J

Description: ATP SYNTHASE DELTA CHAIN protein | Length: 138

No structure alignment results are available for 1QO1.J explicitly.

It is represented by chain 1FS0.e which is 100% sequence identical.

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Entity #5 | Chains K,L,M,N,O,P,Q,R,S,T

Description: ATP SYNTHASE PROTEIN 9 protein | Length: 79

No structure alignment results are available for 1QO1.K, 1QO1.L, 1QO1.M, 1QO1.N, 1QO1.O, 1QO1.P, 1QO1.Q, 1QO1.R, 1QO1.S, 1QO1.T explicitly.

These chains are represented by chain 4UTQ.Z which is 100% sequence identical.

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References