Structural Similarities for the Entities in PDB 1QD7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: CENTRAL FRAGMENT OF 16 S RNA rna | Length: 271

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: S20 RIBOSOMAL PROTEIN protein | Length: 100

Entity #2 | Chains B

Description: END FRAGMENT OF 16 S RNA rna | Length: 88

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: S4 RIBOSOMAL PROTEIN protein | Length: 159

No structure alignment results are available for 1QD7.C explicitly.

It is represented by chain 1EG0.A which is 100% sequence identical.

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Entity #4 | Chains D

Description: S5 RIBOSOMAL PROTEIN protein | Length: 145

No structure alignment results are available for 1QD7.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains E

Description: S6 RIBOSOMAL PROTEIN protein | Length: 97

No structure alignment results are available for 1QD7.E explicitly.

It is represented by chain 1CQM.A which has more than 95% sequence identity.

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Entity #6 | Chains F

Description: S7 RIBOSOMAL PROTEIN protein | Length: 135

No structure alignment results are available for 1QD7.F explicitly.

It is represented by chain 1RSS.A which is 100% sequence identical.

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Entity #7 | Chains G

Description: S8 RIBOSOMAL PROTEIN protein | Length: 136

No structure alignment results are available for 1QD7.G explicitly.

It is represented by chain 1SEI.A which has more than 95% sequence identity.

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Entity #8 | Chains H

Description: S15 RIBOSOMAL PROTEIN protein | Length: 85

No structure alignment results are available for 1QD7.H explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #9 | Chains I

Description: S17 RIBOSOMAL PROTEIN protein | Length: 89

No structure alignment results are available for 1QD7.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References